Solving puzzles in genomics and proteomics [Haixu Tang @ Informatics] | 3:00pm | Lind 102
Discussed three projects: predicting RNA structure from unaligned RNA sequences, De Bruijn graphs and their use for revealing evolutionary history of genomic segmental duplication, and making sense of tandem mass spectrum of peptides and glycans.
- (edited March 9, 2006, 11:21 AM)
Discuss Computational Finance course, Sports Informatics.
Phylogenetic Footprinting of Transcription Factor Binding Sites of Drosophila's ovo gene [Li Shawn Xiaoman@IU School of Medicine IUPUI] | 2:15pm | Myers 209
Use of Gibbs in TFBS.
- 11:20 AM
Meet Claudia and Erika about Paleowind project.
Education Paper | 1:30pm | Geo 505
Meet Joan and Claudia about paper. Preparing data analysis.
Bioinformatics Seminar | 4:00pm | Eig 925
Tornado warning. - (edited November 21, 2005, 11:08 AM)
We have examined the protein-protein interaction networks in yeast, worm, and fly, and have found that proteins with a more central position in all three networks—regardless of the number of direct interactors—evolve more slowly and are more likely to be essential for survival. By studying various types of genetic networks in a number of different genomes, we can begin to understand the determinants of sequence evolution—and therefore of phenotypic evolution.
- 10:58 PM
- 10:50 PM
Discuss SNPex project
Meet CJ | 2:30 | Eig 1010
Discuss Meta-GA problem
- 10:45 PM
Discuss PhD core and other offerings for grad. classes.
Meet Dan Fay and Simon Mercer from Microsoft | 2:00pm | Eig 1010
Dan and Simon meet Beth Plale, Sun Kim, Haixu Tang, Pedja Radivojac, and me. Then escort them to Lindley to meet Dennis Gannon. Dinner at Tallent with Dan, Simon, Dennis, and Geoffrey Fox.
- 10:41 PM
Discuss Argos search engine and catpa library
Meet Rupali | 1:00pm | Eig 1010
Application to PhD programs in Bioinformatics
Meet Andrew | 2:30pm | Eig
Continue work on catpa.org website.
Meet Sun | 3:30pm | Eig
catpa materials for motif discovery--materials due next Sunday
Jim [IM] | 12:51pm | Home
Spiritual assistance for NSF fellowship application. - 12:52 AM
Spoke on the status of various projects including CATPA, Indigene, and Paleo Wind.
NFS/NIH BBSI Proposal Committee Partially Formed
Meet Andrew | 2:00pm | Eig 1010
Get domain name catpa.org and begin making website live. Some links still dead.
- (edited November 9, 2005, 12:41 AM)
Analysis of RECOMB workshop submission comments.
Meet Andrew | 12:30pm | Eig 1010
CATPA website.
Meet Will | 1:30pm | Eig 1010
Graduate school.
Meet Chris | 3:30pm | Eig 1010
Sports Informatics. - 9:37 PM
Work with IUPUI for NSF Proposal Direction | 1:00pm | Eig 1010
Meet Jade | 4:00pm | Eig 1010
Working on procuring data for SNPs program
- (edited November 4, 2005, 1:42 AM)
Meet Dirk | 1:00pm | Lin Hall
Discuss 'belief' project.
Meet L519 Group | 5:00pm | PhD Office
Meet 2nd Capstone Group | 7:00pm | Info 109
- (edited November 4, 2005, 1:44 AM)
Work on completing CATPA portal.
Intrinsic disorder and protein modifications: building an SVM predictor for methylation [Bioinformatics Seminar] Kenny Daily | 4:00pm | Eig 921
Presentation of how disorder, as a feature of a protein, helps distinguish between methylated lysine and arginine.
- (edited November 4, 2005, 1:37 AM)