Indiana University School of Informatics

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Santiago Schnell

Santiago Schnell

Assistant Professor of Informatics
  • Adjunct Assistant Professor of Biology
  • Adjunct Assistant Professor of Physics
  • Associate Director of the Biocomplexity Institute

Editorial Activities

Reprints for the edited publications can be downloaded. If you cannot downloaded a particular offprint and would like to receive it, please email Prof. Schnell its number and we will send you a copy. A list of refereed and non-refereed publications is also available. You can check out our covers

2002-2004

External Guest Editor for Progress in Biophysics and Molecular Biology. Prof. Schnell have edited in collaboration with Prof. Edmund Crampin a special focussed issue on Mathematical Modelling Techniques for Biochemical Reactions and Pathways (Volume 86, Number 1, 2004).

E-1. E. J. Crampin, S. Schnell (2004). New approaches to modelling and analysis of biochemical reactions, pathways and networks. Progress in Biophysics and Molecular Biology 86, 1-4. IU Link (editorial)

E-2. H. M. Sauro and B. N. Kholodenko (2004). Quantitative analysis of signaling networks. Progress in Biophysics and Molecular Biology 86, 5-43. IU Link

E-3. L. Mariani, M. Löhning, A. Radbruch and T. Höfer (2004). Transcriptional control networks of cell differentiation: insights from helper T lymphocytes. Progress in Biophysics and Molecular Biology 86, 45-76. IU Link

E-4. E. J. Crampin, S. Schnell, P. E. McSharry (2004).  Mathematical and computational techniques to deduce complex biochemical reaction mechanisms. Progress in Biophysics and Molecular Biology 86, 77-112. IU Link

E-5. C. J. Roussel and M. R. Roussel (2004). Reaction diffusion models of development with state-dependent chemical diffusion coefficients. Progress in Biophysics and Molecular Biology 86, 113-160. IU Link

2005-2006

Guest Editor for IEE Proceedings Systems Biology. Prof. Schnell have edited a special focussed issue on Unravelling the function and kinetics of biochemical networks (Volume 153, Number 4, 2006, p. 136-308).

E-6. S. Schnell (2006). Editorial: Unravelling the function and kinetics of biochemical networks. IEE Proceedings Systems Biology 153, 139. (editorial)

E-7. R. Thomas (2006). Circular causality. IEE Proceedings Systems Biology 153, 140-153.

E-8. M. Chaves, E. D. Sontag, and R. Albert (2006). Methods of robustness analysis for Boolean models of gene control networks. IEE Proceedings Systems Biology 153, 154-167.

E-9. S. Reinker, R. M. Altman, and J. Timmer (2006). Parameter estimation in stochastic biochemical reactions. IEE Proceedings Systems Biology 153, 168-178.

E-10. G. Craciun and M. Feinberg (2006). Multiple equilibria in complex chemical reaction networks: extensions to entrapped species models. IEE Proceedings Systems Biology 153, 179-186.

E-11. E. H. Flach and S. Schnell (2006). Use and abuse of the quasi-steady-state approximation. IEE Proceedings Systems Biology 153, 187-191.

E-12. H. Qian and D. A. Beard (2006). Metabolic futile cycles and their functions: a systems analysis of energy and control. IEE Proceedings Systems Biology 153, 192-200.

E-13. Y. Zhang and A. Rundell (2006). Comparative study of parameter sensitivity analyses of the TCR-activated Erk-MAPK signalling pathway. IEE Proceedings Systems Biology 153, 201-211.

E-14. C. Ringemann, O. Ebenhöh, R. Heinrich, and H. Ginsburg (2006). Can biochemical properties serve as selective pressure for gene selection during inter-species and endosymbiotic lateral gene transfer? IEE Proceedings Systems Biology 153, 212-222.

E-15. S. R. Paladugu, V. Chickarmane, A. Deckard, J. P. Frumkin, M. McCormack, and H. M. Sauro (2006). In silico evolution of functional modules in biochemical networks. IEE Proceedings Systems Biology 153, 223-235.

E-16. N. Yalamanchili, D. E. Zak, B. A. Ogunnaike, J. S. Schwaber, A. Kriete, and B. N. Kholodenko (2006). Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach. IEE Proceedings Systems Biology 153, 236-246.

E-17. J. Wildenhain and E. J. Crampin (2006). Reconstructing gene regulatory networks: from random to scale-free connectivity. IEE Proceedings Systems Biology 153, 247-256.

E-18. A. de la Fuente and D. P. Makhecha (2006). Unravelling gene networks from noisy under-determined experimental perturbation data. IEE Proceedings Systems Biology 153, 257-262.

E-19. N. A. W. van Riel and E. D. Sontag (2006). Parameter estimation in models combining signal transduction and metabolic pathways: the dependent input approach. IEE Proceedings Systems Biology 153, 263-274.

E-20. S.A. Wahl, M.D. Haunschild, M. Oldiges, and W. Wiechert (2006). Unravelling the regulatory structure of biochemical networks using stimulus response experiments and large-scale model selection. IEE Proceedings Systems Biology 153, 275-285.

E-21. E. O. Voit, J. Almeida, S. Marino, R. Lall, G. Goel, A. R. Neves, and H. Santos (2006). Regulation of glycolysis in Lactococcus lactis: an unfinished systems biological case study. IEE Proceedings Systems Biology 153, 286-298.

E-22. P. Érdi, T. Kiss, J. Tóth, B. Ujfalussy, and L. Zalányi (2006). From systems biology to dynamical neuropharmacology: proposal for a new methodology. IEE Proceedings Systems Biology 153, 299-308.

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