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Santiago Schnell
Assistant Professor of Informatics- Adjunct Assistant Professor of Biology
- Adjunct Assistant Professor of Physics
- Associate Director of the Biocomplexity Institute
Refereed Publications
Reprints for most publications can be downloaded. If you cannot downloaded a particular offprint and would like to receive it, please email Prof. Schnell its number and we will send you a copy. A list of non-refereed publications and editorial activities is also available. You can check out our covers.
1994-1997
S-1. R. Villegas, C. Castillo, M. E. Póo, S. Schnell, C. Piernavieja, D. Balbi and G. M. Villegas (1994). Expression of sodium channels with different saxitoxin affinity during rat forebrain development. Developmental Brain Research 81, 26-40. IU Link
S-2. S. Schnell (1995). El Origen Extraterrestre de las Moléculas Prebióticas. Seminario de Grado. Valle de Sartenejas: Universidad Simón Bolívar.
S-3. S. Schnell, C. Mendoza (1996). A quantitative description of the competitive polymerase chain reaction. In: Simulation Modelling in Bioengineering, M. Cerrolaza, D. Jugo, C. A. Brebbia (editors). Southampton: Computational Mechanics Publications, Wessex Institute of Technology.
S-4. S. Schnell, C. Mendoza (1996). Consideraciones Teóricas de la Reacción en Cadena de la Polimerasa (PCR). In: Técnicas analíticas no convencionales para un desarrollo sustentable, Colección Simposio, Sajo Bohus, J. Liendo (editors). Valle de Sartenejas: Equinoccio.
S-5. S. Schnell (1996). Descripción Teórica de la Reacción en Cadena de la Polimerasa. Trabajo Especial de Grado. Valle de Sartenejas: Universidad Simón Bolívar.
S-6. S. Schnell, C. Mendoza (1997). Enzymological considerations for a theoretical description of the Quantitative Competitive Polymerase Chain Reaction (QC-PCR). Journal of theoretical Biology 184, 433-440. IU Link
S-7. S. Schnell, C. Mendoza.(1997). A closed-form solution for time-dependent enzyme kinetic. Journal of theoretical Biology 187, 207-212. IU Link
S-8. S. Schnell, C. Mendoza (1997). Theoretical description for polymerase chain reaction. Journal of theoretical Biology 188, 313-318. IU Link
2000
S-9. S. Schnell, C. Mendoza (2000). A formula for integrating inverse functions. The Mathematical Gazette, 84, 103-104. IU Link
S-10. S. Schnell, C. Mendoza (2000). Time-dependent closed form solutions for fully competitive enzyme reactions. Bulletin of Mathematical Biology 62, 321-336. IU Link
S-11. S. Schnell, P. K. Maini (2000). Clock and induction model for somitogenesis. Developmental Dynamics 217, 415-420. IU Link
S-12. S. Schnell, P. K. Maini (2000). Enzyme kinetics at high enzyme concentration. Bulletin of Mathematical Biology 62, 483-499. IU Link
S-13. S. Schnell, K. J. Painter, P. K. Maini, H. G. Othmer (2000). Spatiotemporal pattern formation in early development: A review of primitive streak formation and somitogenesis. In: Mathematical models for biological pattern formation, P. K. Maini, H. G. Othmer (editors). Springer-Verlag: New York. IU Link (pdf) or IU Link (ps)
S-14. S. Schnell, C. Mendoza (2000). Enzyme kinetics of multiple alternative substrates. Journal of Mathematical Chemistry 27, 155-170. IU Link
S-15. J. R. Collier, D. McInerney, S. Schnell, P. K. Maini, D. J. Gavaghan, P. Houston, C. D. Stern (2000). A cell cycle model for somitogenesis: mathematical formulation and numerical simulation. Journal of theoretical Biology 207, 305-316. IU Link
2001-2003
S-16. S. Schnell, C. Mendoza (2001). A fast method to estimate kinetic constants for enzyme inhibitors. Acta Biotheoretica 49, 109-113. IU Link
S-17. S. Schnell, P. K. Maini (2002). Enzyme kinetics far from the Standard Quasi-Steady-State and Equilibrium Approximations. Mathematical and Computer Modelling 35, 137-144. IU Link and IU Link - Erratum
S-18. S. Schnell, P. K. Maini, D. McInerney, D. J. Gavaghan, P. Houston (2002). Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology. Comptes Rendus Biologies 325, 179-189. IU Link (invited paper)
S-19. S. Schnell (2002). On the Quasi-Steady-State Approximation: Enzyme-substrate reactions as a case study. D Phil thesis. University of Oxford. Oxford. IU Link
S-20. S. Schnell, P. K. Maini (2003). A century of enzyme kinetics: Reliability of the KM and vmax estimates. Comments on Theoretical Biology 8, 169-187. IU Link (invited paper)
S-21. R. E. Baker, S. Schnell, P. K. Maini (2003). Formation of vertebral precursors: Past Models and Future Predictions. Journal of Theoretical Medicine 5, 23-35. IU Link (invited paper)
2004
S-22. S. Schnell, C. Mendoza (2004). The condition for pseudo-first-order kinetics in enzymatic reactions is independent of the initial enzyme concentration. Biophysical Chemistry 107, 165-174. IU Link
S-23. D. McInerney, S. Schnell, R. E. Baker, P. K. Maini (2004). A mathematical formulation for the cell cycle model in somitogenesis: analysis, parameter constraints and numerical solutions. Mathematical Medicine and Biology 21, 85-113. IU Link
S-24. S. Schnell, T. E. Turner (2004). Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws. Progress in Biophysics and Molecular Biology 85, 235-260. IU Link (invited paper)
S-25. R. Hinch, S. Schnell (2004). Mechanism equivalence in enzyme-substrate reactions: Distributed differential delay in enzyme kinetics. Journal of Mathematical Chemistry 35, 253-264. IU Link
S-26. E. J. Crampin, S. Schnell, P. E. McSharry (2004). Mathematical and computational techniques to deduce complex biochemical reaction mechanisms. Progress in Biophysics and Molecular Biology 86, 77-112. IU Link
S-27. T. E. Turner, S. Schnell, K. Burrage (2004). Stochastic approaches for modelling in vivo reactions. Computational Biology and Chemistry 28, 165-178. IU Link (invited paper)
S-28. E. J. Crampin, P. E. McSharry, S. Schnell (2004). Extracting biochemical reaction kinetics from time series data. Lecture Notes in Artificial Intelligence 3214, 329-336. IU Link
2006
S-29. S. Schnell, M. J. Chappell, N. D. Evans, M. R. Roussel (2006). The mechanism distinguishability problem in biochemical kinetics: The single-enzyme, single-substrate reaction as a case study. Comptes Rendus Biologies 329, 51-61. IU Link - IU Link - Facsimile
S-30. B. Ribba, T. Collin, S. Schnell (2006). A multiscale mathematical model of cancer, and its use in analyzing irradiation therapies. Theoretical Biology and Medical Modelling 3, 7. Open Access
S-31. R. E. Baker, S. Schnell, P. K. Maini (2006). A mathematical investigation of a new model for somitogenesis. Journal of Mathematical Biology 52, 458-482 . IU Link
S-32. R. E. Baker, S. Schnell, P. K. Maini (2006). A clock and wavefront mechanism for somite formation. Developmental Biology 293, 116-126. IU Link
S-33. J. Srividhya, S. Schnell (2006). Why substrate depletion has apparent first-order kinetics in enzymatic digestion. Computational Biology and Chemistry 30, 209-214. IU Link
S-34. R. Grima, S. Schnell (2006). How reaction kinetics with time-dependent rate coefficients differs from generalized mass action. ChemPhysChem 7, 1422-1424. IU Link (communication)
S-35. E. H. Flach, S. Schnell (2006). On the use and abuse of the Quasi-Steady-State Approximation. IEE Proceedings Systems Biology 153, 187-191. IU Link
S-36. S. Roy, S. Schnell, P. Radivojac (2006). Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map. Computational Biology and Chemistry 30, 241-248. IU Link
S-37. R. Grima, S. Schnell (2006). A systematic investigation of the rate laws valid in intracellular environments. Biophysical Chemistry 124, 1-10. IU Link
2007
S-38. S. Schnell, S. M. Hanson (2007). A test for measuring the effects of enzyme inactivation. Biophysical Chemistry 125, 269-274. IU Link
S-39. J. Srividhya, M. S. Gopinathan, S. Schnell (2007). The effects of time delays in a phosphorylation-dephosphorylation pathway. Biophysical Chemistry 125, 286-297. IU Link
S-40. J. Srividhya, E. J. Crampin, P. E. McSharry, S. Schnell (2007). Reconstructing biochemical pathways from time course data. Proteomics 7, 828-838. Selected for In this issue IU Link (invited paper)
S-41. S. Schnell, S. Fortunato, S. Roy (2007). Is the intrinsic disorder of proteins the cause of the scale-free architecture of protein-protein interaction networks? Proteomics 7, 961-964. IU Link (invited paper)
S-42. P. Kulesa, S. Schnell, S. Rudloff, R. E. Barker, P. K. Maini (2007). From segment to somite: Segmentation to epithelialization analyzed within quantitative frameworks. Developmental Dynamics 236, 1392-1402. IU Link (invited paper)
S-43. R. Grima, S. Schnell (2007). A mesoscopic simulation approach for modeling intracellular reactions. Journal of Statistical Physics 128, 139-164. IU Link (invited paper)
S-44. E. H. Flach, S. Schnell, J. Norbury (2007). Turing pattern outside of the Turing domain. Applied Mathematics Letters 20, 959-963. IU Link
S-45. R. Grima, S. Schnell (2007). Can tissue surface tension drive somite formation? Developmental Biology 307, 248-257. IU Link
S-46. E. H. Flach, S. Schnell, J. Norbury (2007). Limit cycles in the presence of convection a travelling wave analysis. Physical Review E 76, 036216. IU Link
2008
S-47. R. E. Baker, S. Schnell, P. K. Maini (2008). Models for somite formation. Current Topics in Developmental Biology 81, 183-203. IU Link (invited paper)
S-48. J. A. Glazier, Y. Zhang, M. Swat, B. Zaitlen, S. Schnell (2008). Coordinated action of N-CAM, N-cadherin, EphA4 and ephrinB2 translates genetic prepatterns into structures during somitogenesis in chick. Current Topics in Developmental Biology 81, 205-247. IU Link (invited paper)
S-49. E. H. Flach, S. Schnell, J. Norbury (2008). Limit cycles in the presence of convection, a first order analysis. Journal of Mathematical Chemistry 43, 101-110. IU Link
S-50. C. Mendoza, L. S. Rodriguez, F. Ruette, S. Schnell (2008). Formation of monocarboxylic acids and polyols on a graphitic surface. Surface Chemistry 602, 1053-1060. IU Link
S-51. S. Schnell, R. Hancock (2008). The intranuclear environment. Methods in Molecular Biology - The Nucleus, in press. IU Link (invited paper)
S-52. R. Grima, S. Schnell (2008). Modelling reaction kinetics inside cells. Essays in Biochemistry 44, in press. IU Link (invited paper)